Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 REXO1L8P-201ENST00000604378 1897 ntBASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMA1Q9UHB6 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 TSPY19P-201ENST00000418461 509 ntBASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 TSPY18P-201ENST00000441642 509 ntBASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMA1Q9UHB6 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 AL121772.3-201ENST00000610840 674 ntBASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 REXO1L6P-202ENST00000619970 1078 ntBASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMA1Q9UHB6 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms