Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
ERCC4Q92889 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 AL513523.2-202ENST00000427283 2040 ntBASIC19.02■□□□□ 0.64
ERCC4Q92889 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.02■□□□□ 0.64
ERCC4Q92889 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.02■□□□□ 0.64
ERCC4Q92889 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.02■□□□□ 0.64
ERCC4Q92889 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.02■□□□□ 0.64
ERCC4Q92889 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.02■□□□□ 0.64
ERCC4Q92889 AL671710.1-201ENST00000610245 2349 ntBASIC19.02■□□□□ 0.64
ERCC4Q92889 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
ERCC4Q92889 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
ERCC4Q92889 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.02■□□□□ 0.63
ERCC4Q92889 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ERCC4Q92889 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
ERCC4Q92889 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ERCC4Q92889 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
ERCC4Q92889 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ERCC4Q92889 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.01■□□□□ 0.63
ERCC4Q92889 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC19.01■□□□□ 0.63
ERCC4Q92889 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 AP005117.1-201ENST00000584346 1413 ntBASIC19.01■□□□□ 0.63
ERCC4Q92889 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
ERCC4Q92889 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
ERCC4Q92889 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.01■□□□□ 0.63
ERCC4Q92889 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.01■□□□□ 0.63
ERCC4Q92889 AL591684.3-201ENST00000605187 298 ntBASIC19.01■□□□□ 0.63
ERCC4Q92889 AL732292.2-201ENST00000609649 430 ntBASIC19.01■□□□□ 0.63
ERCC4Q92889 AC093458.2-201ENST00000623150 629 ntBASIC19.01■□□□□ 0.63
ERCC4Q92889 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.01■□□□□ 0.63
ERCC4Q92889 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.01■□□□□ 0.63
ERCC4Q92889 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.01■□□□□ 0.63
ERCC4Q92889 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.01■□□□□ 0.63
ERCC4Q92889 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ERCC4Q92889 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.01■□□□□ 0.63
ERCC4Q92889 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
ERCC4Q92889 ME2P1-201ENST00000426028 1970 ntBASIC19.01■□□□□ 0.63
ERCC4Q92889 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
ERCC4Q92889 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 AC024909.3-201ENST00000611513 2257 ntBASIC19■□□□□ 0.63
ERCC4Q92889 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
ERCC4Q92889 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC19■□□□□ 0.63
ERCC4Q92889 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19■□□□□ 0.63
ERCC4Q92889 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19■□□□□ 0.63
ERCC4Q92889 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 ATP5G2P1-201ENST00000433580 426 ntBASIC19■□□□□ 0.63
ERCC4Q92889 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19■□□□□ 0.63
ERCC4Q92889 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19■□□□□ 0.63
ERCC4Q92889 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ERCC4Q92889 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
ERCC4Q92889 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19■□□□□ 0.63
ERCC4Q92889 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19■□□□□ 0.63
ERCC4Q92889 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19■□□□□ 0.63
ERCC4Q92889 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19■□□□□ 0.63
ERCC4Q92889 LINC00895-201ENST00000629028 1637 ntBASIC19■□□□□ 0.63
ERCC4Q92889 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ERCC4Q92889 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.99■□□□□ 0.63
ERCC4Q92889 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
ERCC4Q92889 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.99■□□□□ 0.63
ERCC4Q92889 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
ERCC4Q92889 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ERCC4Q92889 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms