Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 AL009183.1-201ENST00000603760 355 ntBASIC16.31■□□□□ 0.2
VRK3Q8IV63 AC068137.2-201ENST00000605408 478 ntBASIC16.31■□□□□ 0.2
VRK3Q8IV63 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 PCDHB19P-201ENST00000570871 2371 ntBASIC16.3■□□□□ 0.2
VRK3Q8IV63 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 AC092364.2-201ENST00000596710 2692 ntBASIC16.3■□□□□ 0.2
VRK3Q8IV63 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 GPAA1P2-202ENST00000606848 1787 ntBASIC16.3■□□□□ 0.2
VRK3Q8IV63 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.3■□□□□ 0.2
VRK3Q8IV63 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VRK3Q8IV63 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 PMS2P4-201ENST00000412466 1052 ntBASIC16.29■□□□□ 0.2
VRK3Q8IV63 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.29■□□□□ 0.2
VRK3Q8IV63 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
VRK3Q8IV63 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK3Q8IV63 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms