Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.34■□□□□ 0.37
PTPN9P43378 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN9P43378 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.34■□□□□ 0.37
PTPN9P43378 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PTPN9P43378 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN9P43378 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN9P43378 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 AC074386.1-202ENST00000463561 864 ntBASIC17.34■□□□□ 0.37
PTPN9P43378 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN9P43378 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN9P43378 AC068137.2-201ENST00000605408 478 ntBASIC17.34■□□□□ 0.37
PTPN9P43378 PCGF3-213ENST00000620529 1899 ntBASIC17.34■□□□□ 0.37
PTPN9P43378 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.34■□□□□ 0.37
PTPN9P43378 AC092865.6-201ENST00000642101 219 ntBASIC17.34■□□□□ 0.37
PTPN9P43378 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN9P43378 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PTPN9P43378 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PTPN9P43378 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN9P43378 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
PTPN9P43378 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN9P43378 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.33■□□□□ 0.37
PTPN9P43378 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
PTPN9P43378 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.33■□□□□ 0.37
PTPN9P43378 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN9P43378 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN9P43378 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.33■□□□□ 0.37
PTPN9P43378 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.33■□□□□ 0.37
PTPN9P43378 LINC01144-201ENST00000626198 1710 ntBASIC17.33■□□□□ 0.37
PTPN9P43378 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
PTPN9P43378 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN9P43378 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.33■□□□□ 0.37
PTPN9P43378 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.33■□□□□ 0.36
PTPN9P43378 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN9P43378 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
PTPN9P43378 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 AC092474.2-201ENST00000424288 719 ntBASIC17.33■□□□□ 0.36
PTPN9P43378 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.33■□□□□ 0.36
PTPN9P43378 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.33■□□□□ 0.36
PTPN9P43378 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTPN9P43378 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN9P43378 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.33■□□□□ 0.36
PTPN9P43378 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.33■□□□□ 0.36
PTPN9P43378 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PTPN9P43378 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.33■□□□□ 0.36
PTPN9P43378 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
PTPN9P43378 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTPN9P43378 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTPN9P43378 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PTPN9P43378 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN9P43378 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN9P43378 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PTPN9P43378 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PTPN9P43378 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.32■□□□□ 0.36
PTPN9P43378 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PTPN9P43378 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN9P43378 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms