Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 AL590787.1-201ENST00000568856 1315 ntBASIC17.01■□□□□ 0.31
RIPK2O43353 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 AC112504.1-201ENST00000623415 1841 ntBASIC17.01■□□□□ 0.31
RIPK2O43353 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 AC013268.4-201ENST00000637413 2228 ntBASIC17.01■□□□□ 0.31
RIPK2O43353 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 CDC14C-201ENST00000428251 1719 ntBASIC17.01■□□□□ 0.31
RIPK2O43353 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 TOP3BP1-201ENST00000420768 1380 ntBASIC17.01■□□□□ 0.31
RIPK2O43353 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.01■□□□□ 0.31
RIPK2O43353 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
RIPK2O43353 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.01■□□□□ 0.31
RIPK2O43353 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
RIPK2O43353 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RIPK2O43353 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
RIPK2O43353 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17■□□□□ 0.31
RIPK2O43353 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
RIPK2O43353 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17■□□□□ 0.31
RIPK2O43353 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17■□□□□ 0.31
RIPK2O43353 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17■□□□□ 0.31
RIPK2O43353 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
RIPK2O43353 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
RIPK2O43353 LINC02447-202ENST00000501888 2146 ntBASIC17■□□□□ 0.31
RIPK2O43353 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RIPK2O43353 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RIPK2O43353 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.99■□□□□ 0.31
RIPK2O43353 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.99■□□□□ 0.31
RIPK2O43353 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.99■□□□□ 0.31
RIPK2O43353 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.99■□□□□ 0.31
RIPK2O43353 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 RCN1P2-201ENST00000398357 915 ntBASIC16.99■□□□□ 0.31
RIPK2O43353 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.99■□□□□ 0.31
RIPK2O43353 NTF6B-201ENST00000591913 560 ntBASIC16.99■□□□□ 0.31
RIPK2O43353 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.99■□□□□ 0.31
RIPK2O43353 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
RIPK2O43353 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.99■□□□□ 0.31
RIPK2O43353 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.99■□□□□ 0.31
RIPK2O43353 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.99■□□□□ 0.31
RIPK2O43353 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.99■□□□□ 0.31
RIPK2O43353 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
RIPK2O43353 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RIPK2O43353 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.99■□□□□ 0.31
RIPK2O43353 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms