Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
MSH4O15457 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
MSH4O15457 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
MSH4O15457 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.58
MSH4O15457 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.7■□□□□ 0.58
MSH4O15457 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.7■□□□□ 0.58
MSH4O15457 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
MSH4O15457 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.7■□□□□ 0.58
MSH4O15457 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH4O15457 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
MSH4O15457 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH4O15457 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 OR6D1P-202ENST00000641007 5290 ntBASIC18.69■□□□□ 0.58
MSH4O15457 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 AL627223.1-201ENST00000416693 442 ntBASIC18.69■□□□□ 0.58
MSH4O15457 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.69■□□□□ 0.58
MSH4O15457 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
MSH4O15457 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.69■□□□□ 0.58
MSH4O15457 AC027307.2-201ENST00000591252 911 ntBASIC18.69■□□□□ 0.58
MSH4O15457 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.69■□□□□ 0.58
MSH4O15457 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 AC008267.7-201ENST00000624570 1194 ntBASIC18.69■□□□□ 0.58
MSH4O15457 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
MSH4O15457 GGT3P-204ENST00000453783 1664 ntBASIC18.69■□□□□ 0.58
MSH4O15457 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH4O15457 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH4O15457 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.68■□□□□ 0.58
MSH4O15457 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.68■□□□□ 0.58
MSH4O15457 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH4O15457 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
MSH4O15457 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
MSH4O15457 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 FAM58DP-201ENST00000428076 619 ntBASIC18.68■□□□□ 0.58
MSH4O15457 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.68■□□□□ 0.58
MSH4O15457 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH4O15457 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.68■□□□□ 0.58
MSH4O15457 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH4O15457 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
MSH4O15457 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
MSH4O15457 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.68■□□□□ 0.58
MSH4O15457 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
MSH4O15457 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH4O15457 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH4O15457 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms