Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AC104692.2-201ENST00000603054 253 ntBASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AL121912.1-201ENST00000603683 238 ntBASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AC004790.2-201ENST00000623588 572 ntBASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 AC129492.6-201ENST00000611383 1305 ntBASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.34■□□□□ 0.05
RSPO3Q9BXY4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.33■□□□□ 0.05
RSPO3Q9BXY4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 AC108073.2-201ENST00000464002 357 ntBASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 RNA5SP419-201ENST00000515908 135 ntBASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 AC087641.1-201ENST00000557561 1021 ntBASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 AC105339.3-201ENST00000560043 636 ntBASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 FAM215A-202ENST00000632077 792 ntBASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.33■□□□□ 0.04
RSPO3Q9BXY4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 GGTLC5P-201ENST00000617623 998 ntBASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 AC117500.6-201ENST00000624871 588 ntBASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RSPO3Q9BXY4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms