Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLIP1P30622 FO538757.1-201ENST00000623083 1397 ntBASIC26.3■■□□□ 1.8
CLIP1P30622 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC26.3■■□□□ 1.8
CLIP1P30622 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC26.3■■□□□ 1.8
CLIP1P30622 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC26.3■■□□□ 1.8
CLIP1P30622 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLIP1P30622 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
CLIP1P30622 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLIP1P30622 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC26.3■■□□□ 1.8
CLIP1P30622 WBP2-203ENST00000433525 928 ntTSL 2 BASIC26.3■■□□□ 1.8
CLIP1P30622 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC26.3■■□□□ 1.8
CLIP1P30622 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC26.3■■□□□ 1.8
CLIP1P30622 AC190387.1-201ENST00000551683 408 ntBASIC26.3■■□□□ 1.8
CLIP1P30622 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC26.3■■□□□ 1.8
CLIP1P30622 AL158211.3-201ENST00000607385 239 ntBASIC26.3■■□□□ 1.8
CLIP1P30622 AC018529.1-201ENST00000613063 361 ntBASIC26.3■■□□□ 1.8
CLIP1P30622 SPTSSB-204ENST00000617024 1292 ntBASIC26.3■■□□□ 1.8
CLIP1P30622 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC26.3■■□□□ 1.8
CLIP1P30622 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CLIP1P30622 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CLIP1P30622 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC26.29■■□□□ 1.8
CLIP1P30622 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CLIP1P30622 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC26.29■■□□□ 1.8
CLIP1P30622 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CLIP1P30622 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 MIR661-201ENST00000384842 89 ntBASIC26.29■■□□□ 1.8
CLIP1P30622 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC26.29■■□□□ 1.8
CLIP1P30622 TAF8-206ENST00000472818 719 ntTSL 2 BASIC26.29■■□□□ 1.8
CLIP1P30622 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 INGX-202ENST00000489074 768 ntBASIC26.29■■□□□ 1.8
CLIP1P30622 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC26.29■■□□□ 1.8
CLIP1P30622 POLD4-211ENST00000539074 714 ntTSL 3 BASIC26.29■■□□□ 1.8
CLIP1P30622 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC26.29■■□□□ 1.8
CLIP1P30622 SPDYE12P-201ENST00000618416 771 ntBASIC26.29■■□□□ 1.8
CLIP1P30622 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC26.29■■□□□ 1.8
CLIP1P30622 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC26.29■■□□□ 1.8
CLIP1P30622 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC26.29■■□□□ 1.8
CLIP1P30622 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLIP1P30622 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CLIP1P30622 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CLIP1P30622 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC26.28■■□□□ 1.8
CLIP1P30622 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC26.28■■□□□ 1.8
CLIP1P30622 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC26.28■■□□□ 1.8
CLIP1P30622 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CLIP1P30622 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CLIP1P30622 PCGF3-213ENST00000620529 1899 ntBASIC26.28■■□□□ 1.8
CLIP1P30622 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
CLIP1P30622 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLIP1P30622 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC26.27■■□□□ 1.8
CLIP1P30622 COPE-202ENST00000349893 948 ntTSL 2 BASIC26.27■■□□□ 1.8
CLIP1P30622 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 AC236430.1-201ENST00000402231 743 ntBASIC26.27■■□□□ 1.8
CLIP1P30622 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC26.27■■□□□ 1.8
CLIP1P30622 AC002472.2-201ENST00000442739 958 ntBASIC26.27■■□□□ 1.8
CLIP1P30622 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CLIP1P30622 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC26.27■■□□□ 1.8
CLIP1P30622 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC26.27■■□□□ 1.8
CLIP1P30622 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC26.27■■□□□ 1.8
CLIP1P30622 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC26.27■■□□□ 1.8
CLIP1P30622 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC26.27■■□□□ 1.8
CLIP1P30622 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLIP1P30622 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC26.27■■□□□ 1.8
CLIP1P30622 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CLIP1P30622 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLIP1P30622 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC26.26■■□□□ 1.79
CLIP1P30622 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC26.26■■□□□ 1.79
CLIP1P30622 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC26.26■■□□□ 1.79
CLIP1P30622 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLIP1P30622 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC26.26■■□□□ 1.79
CLIP1P30622 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC26.26■■□□□ 1.79
CLIP1P30622 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
CLIP1P30622 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC26.26■■□□□ 1.79
CLIP1P30622 AC098859.1-201ENST00000502915 1238 ntBASIC26.26■■□□□ 1.79
CLIP1P30622 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms