Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 MST1L-201ENST00000442552 2185 ntBASIC13.54□□□□□ -0.24
HMGB3O15347 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HMGB3O15347 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
HMGB3O15347 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
HMGB3O15347 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 HLA-A-202ENST00000376806 1854 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC13.53□□□□□ -0.24
HMGB3O15347 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
HMGB3O15347 PVRIG2P-201ENST00000435460 978 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC13.53□□□□□ -0.24
HMGB3O15347 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 KRT18P6-201ENST00000555540 1265 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC13.53□□□□□ -0.24
HMGB3O15347 AP005242.2-201ENST00000580065 1175 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC13.53□□□□□ -0.24
HMGB3O15347 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 AL157888.1-201ENST00000631930 593 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 AC092865.7-201ENST00000641832 219 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 AL135905.2-201ENST00000584934 1404 ntBASIC13.53□□□□□ -0.24
HMGB3O15347 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
HMGB3O15347 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.53□□□□□ -0.24
HMGB3O15347 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
HMGB3O15347 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HMGB3O15347 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.53□□□□□ -0.24
HMGB3O15347 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.52□□□□□ -0.24
HMGB3O15347 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HMGB3O15347 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
HMGB3O15347 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.52□□□□□ -0.24
HMGB3O15347 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 NAV1-203ENST00000367302 9685 ntTSL 5 BASIC13.52□□□□□ -0.24
HMGB3O15347 STRC-213ENST00000541030 5305 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
HMGB3O15347 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HMGB3O15347 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HMGB3O15347 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC13.52□□□□□ -0.24
HMGB3O15347 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
HMGB3O15347 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.52□□□□□ -0.24
HMGB3O15347 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.52□□□□□ -0.25
HMGB3O15347 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC13.52□□□□□ -0.25
HMGB3O15347 AC007663.1-201ENST00000438948 1240 ntBASIC13.52□□□□□ -0.25
HMGB3O15347 AC009947.2-201ENST00000444014 672 ntBASIC13.52□□□□□ -0.25
HMGB3O15347 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC13.52□□□□□ -0.25
HMGB3O15347 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC13.52□□□□□ -0.25
HMGB3O15347 AC112698.1-201ENST00000510299 916 ntBASIC13.52□□□□□ -0.25
HMGB3O15347 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC13.52□□□□□ -0.25
HMGB3O15347 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
HMGB3O15347 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
HMGB3O15347 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms