Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 ANKRD20A18P-201ENST00000359341 492 ntBASIC11.91□□□□□ -0.5
RPL39P62891 MIR662-201ENST00000384847 95 ntBASIC11.91□□□□□ -0.5
RPL39P62891 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC11.91□□□□□ -0.5
RPL39P62891 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC11.91□□□□□ -0.5
RPL39P62891 AL359075.1-203ENST00000462729 1002 ntBASIC11.91□□□□□ -0.5
RPL39P62891 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 TMA16-209ENST00000513272 803 ntTSL 2 BASIC11.91□□□□□ -0.5
RPL39P62891 DENND3-207ENST00000518347 850 ntTSL 2 BASIC11.91□□□□□ -0.5
RPL39P62891 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC11.91□□□□□ -0.5
RPL39P62891 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC11.91□□□□□ -0.5
RPL39P62891 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC11.91□□□□□ -0.5
RPL39P62891 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC11.91□□□□□ -0.5
RPL39P62891 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC11.91□□□□□ -0.5
RPL39P62891 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC11.91□□□□□ -0.5
RPL39P62891 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 AC126177.1-201ENST00000547829 2218 ntBASIC11.91□□□□□ -0.5
RPL39P62891 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
RPL39P62891 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
RPL39P62891 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC11.91□□□□□ -0.5
RPL39P62891 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
RPL39P62891 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC11.9□□□□□ -0.5
RPL39P62891 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 STARP1-201ENST00000397973 869 ntBASIC11.9□□□□□ -0.5
RPL39P62891 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
RPL39P62891 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
RPL39P62891 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC11.9□□□□□ -0.5
RPL39P62891 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC11.9□□□□□ -0.5
RPL39P62891 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC11.9□□□□□ -0.5
RPL39P62891 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC11.9□□□□□ -0.5
RPL39P62891 AL390719.2-201ENST00000606993 987 ntBASIC11.9□□□□□ -0.5
RPL39P62891 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 AC073912.3-201ENST00000624414 853 ntBASIC11.9□□□□□ -0.5
RPL39P62891 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC11.9□□□□□ -0.5
RPL39P62891 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
RPL39P62891 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
RPL39P62891 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
RPL39P62891 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC11.9□□□□□ -0.5
RPL39P62891 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
RPL39P62891 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.51
RPL39P62891 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.51
RPL39P62891 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
RPL39P62891 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
RPL39P62891 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
RPL39P62891 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
RPL39P62891 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC11.89□□□□□ -0.51
RPL39P62891 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC11.89□□□□□ -0.51
RPL39P62891 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
RPL39P62891 PC-204ENST00000524491 1714 ntTSL 2 BASIC11.89□□□□□ -0.51
RPL39P62891 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms