Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 ZNF259P1-201ENST00000407656 1365 ntBASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 AC107918.2-201ENST00000530817 355 ntBASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 AC145285.3-201ENST00000564603 959 ntBASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 OR7E47P-204ENST00000575924 449 ntBASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 MPDU1-223ENST00000582151 728 ntBASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 AL353732.1-201ENST00000569618 1459 ntBASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE3Q6ZMZ3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
SYNE3Q6ZMZ3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SYNE3Q6ZMZ3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.77■□□□□ 0.75
SYNE3Q6ZMZ3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SYNE3Q6ZMZ3 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SYNE3Q6ZMZ3 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 LINC00895-201ENST00000629028 1637 ntBASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 AL645728.1-201ENST00000366221 2101 ntBASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 FLJ38576-201ENST00000623820 2459 ntBASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE3Q6ZMZ3 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 FAM185BP-201ENST00000443595 716 ntBASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 CXCL1P1-201ENST00000502804 216 ntBASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.75■□□□□ 0.75
SYNE3Q6ZMZ3 AC013467.2-201ENST00000605472 835 ntBASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms