Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX2-1P43699 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX2-1P43699 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.82□□□□□ -0.2
NKX2-1P43699 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX2-1P43699 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX2-1P43699 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC023824.1-201ENST00000562945 2975 ntBASIC13.81□□□□□ -0.2
NKX2-1P43699 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.81□□□□□ -0.2
NKX2-1P43699 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 CLN6-221ENST00000637494 765 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
NKX2-1P43699 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
NKX2-1P43699 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
NKX2-1P43699 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX2-1P43699 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX2-1P43699 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX2-1P43699 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX2-1P43699 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX2-1P43699 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.8□□□□□ -0.2
NKX2-1P43699 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX2-1P43699 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
NKX2-1P43699 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX2-1P43699 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX2-1P43699 STK19B-204ENST00000512515 211 ntBASIC13.8□□□□□ -0.2
NKX2-1P43699 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX2-1P43699 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.8□□□□□ -0.2
NKX2-1P43699 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 AC140113.3-201ENST00000605663 199 ntBASIC13.8□□□□□ -0.2
NKX2-1P43699 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX2-1P43699 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 KRT18P22-201ENST00000402024 1347 ntBASIC13.8□□□□□ -0.2
NKX2-1P43699 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX2-1P43699 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 KRT8P10-201ENST00000450021 1447 ntBASIC13.8□□□□□ -0.2
NKX2-1P43699 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.8□□□□□ -0.2
NKX2-1P43699 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX2-1P43699 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX2-1P43699 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX2-1P43699 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms