Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.22■□□□□ 0.03
FREM3P0C091 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 YBX1P5-201ENST00000509441 847 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 MIR3909-201ENST00000579518 119 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 AC093512.1-201ENST00000617969 520 ntBASIC15.22■□□□□ 0.03
FREM3P0C091 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.22■□□□□ 0.03
FREM3P0C091 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.22■□□□□ 0.03
FREM3P0C091 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.22■□□□□ 0.03
FREM3P0C091 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FREM3P0C091 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
FREM3P0C091 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.21■□□□□ 0.03
FREM3P0C091 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
FREM3P0C091 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.21■□□□□ 0.03
FREM3P0C091 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
FREM3P0C091 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.21■□□□□ 0.03
FREM3P0C091 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
FREM3P0C091 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
FREM3P0C091 AL627223.1-201ENST00000416693 442 ntBASIC15.21■□□□□ 0.03
FREM3P0C091 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.21■□□□□ 0.03
FREM3P0C091 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.21■□□□□ 0.03
FREM3P0C091 KRT8P48-201ENST00000515599 1220 ntBASIC15.21■□□□□ 0.03
FREM3P0C091 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.21■□□□□ 0.03
FREM3P0C091 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.21■□□□□ 0.03
FREM3P0C091 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.21■□□□□ 0.03
FREM3P0C091 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.21■□□□□ 0.03
FREM3P0C091 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.03
FREM3P0C091 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FREM3P0C091 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.21■□□□□ 0.03
FREM3P0C091 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.21■□□□□ 0.02
FREM3P0C091 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
FREM3P0C091 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
FREM3P0C091 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
FREM3P0C091 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.21■□□□□ 0.02
FREM3P0C091 AL603756.1-201ENST00000606511 2163 ntBASIC15.21■□□□□ 0.02
FREM3P0C091 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 AL671710.1-201ENST00000610245 2349 ntBASIC15.2■□□□□ 0.02
FREM3P0C091 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.2■□□□□ 0.02
FREM3P0C091 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
FREM3P0C091 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.2■□□□□ 0.02
FREM3P0C091 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
FREM3P0C091 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.2■□□□□ 0.02
FREM3P0C091 AL031055.1-201ENST00000606362 631 ntBASIC15.2■□□□□ 0.02
FREM3P0C091 AP001059.3-201ENST00000619053 235 ntBASIC15.2■□□□□ 0.02
FREM3P0C091 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
FREM3P0C091 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.2■□□□□ 0.02
FREM3P0C091 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
FREM3P0C091 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
FREM3P0C091 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.2■□□□□ 0.02
FREM3P0C091 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
FREM3P0C091 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.2■□□□□ 0.02
FREM3P0C091 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.2■□□□□ 0.02
FREM3P0C091 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FREM3P0C091 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.2■□□□□ 0.02
FREM3P0C091 TIMM8BP1-201ENST00000452384 211 ntBASIC15.2■□□□□ 0.02
FREM3P0C091 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms