Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 FGFR3P6-201ENST00000457012 610 ntBASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 SART3-203ENST00000546611 1184 ntBASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 KRT8P39-201ENST00000396270 1433 ntBASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 AL365203.3-201ENST00000609742 2057 ntBASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 PTCHD3P3-201ENST00000403073 906 ntBASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 MTDHP4-201ENST00000600287 670 ntBASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 AL031731.1-201ENST00000642131 2094 ntBASIC17.56■□□□□ 0.4
PCDHA3Q9Y5H8 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 GGT4P-201ENST00000623672 1708 ntBASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 KRT18P31-201ENST00000506277 1292 ntBASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHA3Q9Y5H8 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms