Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 AL603756.1-201ENST00000606511 2163 ntBASIC18.88■□□□□ 0.61
COL20A1Q9P218 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.88■□□□□ 0.61
COL20A1Q9P218 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL20A1Q9P218 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 MIR943-201ENST00000401286 94 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 FAM8A3P-201ENST00000427218 844 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 AC055876.3-201ENST00000431496 288 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 AC125807.1-201ENST00000483097 614 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 AC011467.4-201ENST00000594891 528 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 AL096865.1-201ENST00000606796 927 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 AC138649.4-201ENST00000612222 287 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 AP3S2-216ENST00000617003 1561 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 FO538757.1-201ENST00000623083 1397 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.87■□□□□ 0.61
COL20A1Q9P218 AL139011.1-202ENST00000642063 584 ntBASIC18.87■□□□□ 0.61
COL20A1Q9P218 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL20A1Q9P218 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 AC105020.1-201ENST00000435356 2205 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 TREML5P-201ENST00000421694 576 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 AC107890.1-201ENST00000422478 521 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 RARRES2P9-201ENST00000565168 469 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 MIR4453-201ENST00000584019 89 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 RNF216P1-203ENST00000404404 2427 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 LETM1P2-201ENST00000597330 2178 ntBASIC18.86■□□□□ 0.61
COL20A1Q9P218 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.86■□□□□ 0.61
COL20A1Q9P218 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL20A1Q9P218 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms