Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 UNC93B6-202ENST00000528242 690 ntBASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC65Q8IXS2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 SLC22A20-204ENST00000530038 1673 ntBASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 UBALD1-205ENST00000590891 2641 ntBASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 RNA5SP415-201ENST00000517246 115 ntBASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 IGHV3-22-201ENST00000520721 359 ntBASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 AP001350.2-201ENST00000625104 1094 ntBASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC65Q8IXS2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 AL118508.1-201ENST00000613502 2345 ntBASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 HCG4-201ENST00000418983 998 ntBASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 AC009947.1-201ENST00000444350 727 ntBASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 AC087641.1-201ENST00000557561 1021 ntBASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 AL121894.2-201ENST00000602977 491 ntBASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC65Q8IXS2 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms