Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 HLA-DRB6-201ENST00000411500 1235 ntBASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 SPDYE14P-201ENST00000442619 822 ntBASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 AC026150.2-201ENST00000564693 1156 ntBASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 AP001059.3-201ENST00000619053 235 ntBASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
UBE3BQ7Z3V4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 MIR346-201ENST00000362234 95 ntBASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 FAM86GP-201ENST00000448322 971 ntBASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 KRT8P39-201ENST00000396270 1433 ntBASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3BQ7Z3V4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 KRT18P34-201ENST00000488218 1270 ntBASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 AL512356.2-201ENST00000546955 174 ntBASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3BQ7Z3V4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms