Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP41Q3LFD5 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.82■□□□□ 0.44
USP41Q3LFD5 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 MIR6080-201ENST00000617359 66 ntBASIC17.81■□□□□ 0.44
USP41Q3LFD5 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
USP41Q3LFD5 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP41Q3LFD5 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 COX20P2-201ENST00000452636 358 ntBASIC17.8■□□□□ 0.44
USP41Q3LFD5 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 AC124947.2-201ENST00000547118 1133 ntBASIC17.8■□□□□ 0.44
USP41Q3LFD5 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 AL138918.1-201ENST00000568306 659 ntBASIC17.8■□□□□ 0.44
USP41Q3LFD5 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.8■□□□□ 0.44
USP41Q3LFD5 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 LINC02012-201ENST00000608206 1725 ntBASIC17.8■□□□□ 0.44
USP41Q3LFD5 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms