Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.06■□□□□ 0
CLRN1P58418 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
CLRN1P58418 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.06■□□□□ 0
CLRN1P58418 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN1P58418 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN1P58418 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.06■□□□□ 0
CLRN1P58418 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN1P58418 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CLRN1P58418 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.05■□□□□ 0
CLRN1P58418 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
CLRN1P58418 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.05■□□□□ 0
CLRN1P58418 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.05■□□□□ 0
CLRN1P58418 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.05■□□□□ 0
CLRN1P58418 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN1P58418 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.05■□□□□ -0
CLRN1P58418 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CLRN1P58418 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 AC105339.3-201ENST00000560043 636 ntBASIC15.05■□□□□ -0
CLRN1P58418 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.05■□□□□ -0
CLRN1P58418 GGTLC5P-201ENST00000617623 998 ntBASIC15.05■□□□□ -0
CLRN1P58418 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.05■□□□□ -0
CLRN1P58418 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.05■□□□□ -0
CLRN1P58418 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 AL645728.1-201ENST00000366221 2101 ntBASIC15.05■□□□□ -0
CLRN1P58418 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.05■□□□□ -0
CLRN1P58418 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.05■□□□□ -0
CLRN1P58418 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
CLRN1P58418 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN1P58418 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.04■□□□□ -0
CLRN1P58418 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CLRN1P58418 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.04■□□□□ -0
CLRN1P58418 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CLRN1P58418 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.04■□□□□ -0
CLRN1P58418 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.04■□□□□ -0
CLRN1P58418 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.04■□□□□ -0
CLRN1P58418 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 TOP3BP1-201ENST00000420768 1380 ntBASIC15.04■□□□□ -0
CLRN1P58418 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.04■□□□□ -0
CLRN1P58418 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.04■□□□□ -0
CLRN1P58418 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.04■□□□□ -0
CLRN1P58418 AC079781.3-201ENST00000449110 356 ntBASIC15.04■□□□□ -0
CLRN1P58418 KRT126P-201ENST00000549467 1181 ntBASIC15.04■□□□□ -0
CLRN1P58418 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.04■□□□□ -0
CLRN1P58418 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CLRN1P58418 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.04■□□□□ -0
CLRN1P58418 AC005593.1-201ENST00000624894 515 ntBASIC15.04■□□□□ -0
CLRN1P58418 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CLRN1P58418 PGM5P2-202ENST00000637225 1043 ntBASIC15.04■□□□□ -0
CLRN1P58418 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.04■□□□□ -0
CLRN1P58418 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CLRN1P58418 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN1P58418 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms