Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC21.96■■□□□ 1.11
COL3A1P02461 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.96■■□□□ 1.11
COL3A1P02461 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
COL3A1P02461 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL3A1P02461 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
COL3A1P02461 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
COL3A1P02461 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
COL3A1P02461 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.11
COL3A1P02461 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.95■■□□□ 1.11
COL3A1P02461 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
COL3A1P02461 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 PP14571-201ENST00000404327 934 ntTSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.95■■□□□ 1.1
COL3A1P02461 AC092580.3-201ENST00000430932 139 ntBASIC21.95■■□□□ 1.1
COL3A1P02461 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 AC007967.4-201ENST00000614700 386 ntBASIC21.95■■□□□ 1.1
COL3A1P02461 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
COL3A1P02461 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL3A1P02461 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.95■■□□□ 1.1
COL3A1P02461 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.94■■□□□ 1.1
COL3A1P02461 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.94■■□□□ 1.1
COL3A1P02461 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
COL3A1P02461 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.94■■□□□ 1.1
COL3A1P02461 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL3A1P02461 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.94■■□□□ 1.1
COL3A1P02461 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.93■■□□□ 1.1
COL3A1P02461 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.93■■□□□ 1.1
COL3A1P02461 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
COL3A1P02461 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
COL3A1P02461 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.93■■□□□ 1.1
COL3A1P02461 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
COL3A1P02461 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.93■■□□□ 1.1
COL3A1P02461 FAM86GP-201ENST00000448322 971 ntBASIC21.93■■□□□ 1.1
COL3A1P02461 KLF2P3-201ENST00000451977 1087 ntBASIC21.93■■□□□ 1.1
COL3A1P02461 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
COL3A1P02461 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.93■■□□□ 1.1
COL3A1P02461 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC21.93■■□□□ 1.1
COL3A1P02461 SPDYE12P-201ENST00000618416 771 ntBASIC21.93■■□□□ 1.1
COL3A1P02461 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC21.93■■□□□ 1.1
COL3A1P02461 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms