Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHA3Q9Y5H8 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
PCDHA3Q9Y5H8 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHA3Q9Y5H8 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHA3Q9Y5H8 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 AC139887.3-201ENST00000568585 713 ntBASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 MPDU1-223ENST00000582151 728 ntBASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 AC004706.3-202ENST00000621574 984 ntBASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 REXO1L3P-201ENST00000622202 1288 ntBASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHA3Q9Y5H8 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
PCDHA3Q9Y5H8 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 AC087163.2-201ENST00000457299 853 ntBASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 AL445228.2-201ENST00000605589 952 ntBASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 AF228730.7-201ENST00000641842 219 ntBASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PCDHA3Q9Y5H8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 AC002310.6-201ENST00000624451 1377 ntBASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 ARMC10P1-201ENST00000313754 855 ntBASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDHA3Q9Y5H8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms