Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USP28Q96RU2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
USP28Q96RU2 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.26■□□□□ 0.67
USP28Q96RU2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.26■□□□□ 0.67
USP28Q96RU2 PRELID1P1-202ENST00000567272 903 ntBASIC19.26■□□□□ 0.67
USP28Q96RU2 MPDU1-223ENST00000582151 728 ntBASIC19.26■□□□□ 0.67
USP28Q96RU2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.26■□□□□ 0.67
USP28Q96RU2 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.26■□□□□ 0.67
USP28Q96RU2 GGT3P-204ENST00000453783 1664 ntBASIC19.26■□□□□ 0.67
USP28Q96RU2 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP28Q96RU2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.26■□□□□ 0.67
USP28Q96RU2 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.26■□□□□ 0.67
USP28Q96RU2 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP28Q96RU2 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP28Q96RU2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USP28Q96RU2 PI4KAP1-204ENST00000612579 1703 ntBASIC19.25■□□□□ 0.67
USP28Q96RU2 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.25■□□□□ 0.67
USP28Q96RU2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.25■□□□□ 0.67
USP28Q96RU2 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.25■□□□□ 0.67
USP28Q96RU2 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.25■□□□□ 0.67
USP28Q96RU2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.25■□□□□ 0.67
USP28Q96RU2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.25■□□□□ 0.67
USP28Q96RU2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USP28Q96RU2 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
USP28Q96RU2 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP28Q96RU2 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.25■□□□□ 0.67
USP28Q96RU2 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP28Q96RU2 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.24■□□□□ 0.67
USP28Q96RU2 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
USP28Q96RU2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.24■□□□□ 0.67
USP28Q96RU2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
USP28Q96RU2 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.24■□□□□ 0.67
USP28Q96RU2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.24■□□□□ 0.67
USP28Q96RU2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.24■□□□□ 0.67
USP28Q96RU2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
USP28Q96RU2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
USP28Q96RU2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.24■□□□□ 0.67
USP28Q96RU2 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.24■□□□□ 0.67
USP28Q96RU2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
USP28Q96RU2 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.24■□□□□ 0.67
USP28Q96RU2 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USP28Q96RU2 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.24■□□□□ 0.67
USP28Q96RU2 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.24■□□□□ 0.67
USP28Q96RU2 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
USP28Q96RU2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP28Q96RU2 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms