Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC60Q8IWA6 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 HMGN1P19-201ENST00000436976 333 ntBASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 AC004449.1-201ENST00000564240 433 ntBASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 AC106028.4-201ENST00000614509 607 ntBASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC60Q8IWA6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 IGHV3-62-201ENST00000520057 340 ntBASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 AL138918.1-201ENST00000568306 659 ntBASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC60Q8IWA6 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 UXT-AS1-201ENST00000590504 1525 ntBASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC60Q8IWA6 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms