Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB1Q86U70 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB1Q86U70 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.83■□□□□ 0.28
LDB1Q86U70 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.83■□□□□ 0.28
LDB1Q86U70 AC092910.1-201ENST00000482027 1129 ntBASIC16.83■□□□□ 0.28
LDB1Q86U70 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
LDB1Q86U70 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LDB1Q86U70 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.83■□□□□ 0.28
LDB1Q86U70 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.83■□□□□ 0.28
LDB1Q86U70 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDB1Q86U70 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB1Q86U70 AC092364.2-201ENST00000596710 2692 ntBASIC16.83■□□□□ 0.28
LDB1Q86U70 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB1Q86U70 REXO1L3P-201ENST00000622202 1288 ntBASIC16.83■□□□□ 0.28
LDB1Q86U70 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
LDB1Q86U70 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.83■□□□□ 0.28
LDB1Q86U70 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.83■□□□□ 0.28
LDB1Q86U70 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDB1Q86U70 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 ALOX12P2-203ENST00000570921 1945 ntBASIC16.82■□□□□ 0.28
LDB1Q86U70 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LDB1Q86U70 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 FAAHP1-202ENST00000446499 1238 ntBASIC16.82■□□□□ 0.28
LDB1Q86U70 AL160237.2-201ENST00000556165 472 ntBASIC16.82■□□□□ 0.28
LDB1Q86U70 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
LDB1Q86U70 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.82■□□□□ 0.28
LDB1Q86U70 MIR7706-201ENST00000613747 67 ntBASIC16.82■□□□□ 0.28
LDB1Q86U70 MIR1199-201ENST00000621445 119 ntBASIC16.82■□□□□ 0.28
LDB1Q86U70 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 AF228730.7-201ENST00000641842 219 ntBASIC16.82■□□□□ 0.28
LDB1Q86U70 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.82■□□□□ 0.28
LDB1Q86U70 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDB1Q86U70 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LDB1Q86U70 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LDB1Q86U70 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 TOP3BP1-201ENST00000420768 1380 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.81■□□□□ 0.28
LDB1Q86U70 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LDB1Q86U70 AL031284.1-201ENST00000419297 478 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 AC009078.2-202ENST00000463353 338 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.81■□□□□ 0.28
LDB1Q86U70 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 AC117500.6-201ENST00000624871 588 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 AC005052.1-201ENST00000625181 2492 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.81■□□□□ 0.28
LDB1Q86U70 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 AL671710.1-201ENST00000610245 2349 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB1Q86U70 AC006277.1-201ENST00000624348 1610 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 LINC00895-201ENST00000629028 1637 ntBASIC16.81■□□□□ 0.28
LDB1Q86U70 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.81■□□□□ 0.28
LDB1Q86U70 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB1Q86U70 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB1Q86U70 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms