Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.67■□□□□ 0.1
PRKNO60260 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.67■□□□□ 0.1
PRKNO60260 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.67■□□□□ 0.1
PRKNO60260 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 AL645728.1-201ENST00000366221 2101 ntBASIC15.67■□□□□ 0.1
PRKNO60260 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.67■□□□□ 0.1
PRKNO60260 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 TOP3BP1-201ENST00000420768 1380 ntBASIC15.66■□□□□ 0.1
PRKNO60260 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 FLJ38576-201ENST00000623820 2459 ntBASIC15.66■□□□□ 0.1
PRKNO60260 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.66■□□□□ 0.1
PRKNO60260 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.66■□□□□ 0.1
PRKNO60260 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.66■□□□□ 0.1
PRKNO60260 AC074386.1-202ENST00000463561 864 ntBASIC15.66■□□□□ 0.1
PRKNO60260 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.66■□□□□ 0.1
PRKNO60260 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
PRKNO60260 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.66■□□□□ 0.1
PRKNO60260 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.66■□□□□ 0.1
PRKNO60260 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.66■□□□□ 0.1
PRKNO60260 MTDHP5-201ENST00000598980 586 ntBASIC15.66■□□□□ 0.1
PRKNO60260 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.66■□□□□ 0.1
PRKNO60260 AL078644.1-201ENST00000609881 752 ntBASIC15.66■□□□□ 0.1
PRKNO60260 AC006538.3-201ENST00000612495 578 ntBASIC15.66■□□□□ 0.1
PRKNO60260 AC139530.3-201ENST00000620344 690 ntBASIC15.66■□□□□ 0.1
PRKNO60260 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
PRKNO60260 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.66■□□□□ 0.1
PRKNO60260 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKNO60260 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.65■□□□□ 0.1
PRKNO60260 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 AC009053.2-201ENST00000563701 2365 ntBASIC15.65■□□□□ 0.1
PRKNO60260 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PRKNO60260 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PRKNO60260 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.65■□□□□ 0.1
PRKNO60260 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
PRKNO60260 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.65■□□□□ 0.1
PRKNO60260 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.65■□□□□ 0.1
PRKNO60260 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.65■□□□□ 0.1
PRKNO60260 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKNO60260 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
PRKNO60260 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKNO60260 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PRKNO60260 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms