Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM56Q9BRZ2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AC097637.2-201ENST00000624096 1997 ntBASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AC012615.1-201ENST00000565797 1299 ntBASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 MIR5100-201ENST00000579544 119 ntBASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM56Q9BRZ2 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 AL020989.1-201ENST00000422979 469 ntBASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 DUSP5P1-201ENST00000441325 1139 ntBASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 DUX4L17-201ENST00000557360 1267 ntBASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 AP001269.4-201ENST00000609611 512 ntBASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 DOC2GP-204ENST00000639052 2548 ntBASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM56Q9BRZ2 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM56Q9BRZ2 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms