Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC015911.4-201ENST00000588022 1070 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC012645.4-201ENST00000610691 1061 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AL353593.2-201ENST00000602529 1483 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PON3-205ENST00000451904 1053 ntTSL 3 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PTCHD3P3-201ENST00000403073 906 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 REXO1L9P-201ENST00000604264 2108 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC002310.6-201ENST00000624451 1377 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ACTG1P14-201ENST00000446382 1122 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 AC027612.4-201ENST00000605371 583 ntBASIC5.25□□□□□ -1.57
SYNE1Q8NF91 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SYNE1Q8NF91 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AL662844.4-201ENST00000606367 2838 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC096734.2-201ENST00000562054 433 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms