Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 AL513477.1-201ENST00000602865 2407 ntBASIC15.22■□□□□ 0.03
NHLRC1Q6VVB1 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 RPS2P1-201ENST00000434010 821 ntBASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 FAM197Y8-203ENST00000450145 560 ntBASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 AC148477.8-201ENST00000624298 468 ntBASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
NHLRC1Q6VVB1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NHLRC1Q6VVB1 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.21■□□□□ 0.02
NHLRC1Q6VVB1 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.02
NHLRC1Q6VVB1 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.21■□□□□ 0.02
NHLRC1Q6VVB1 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NHLRC1Q6VVB1 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
NHLRC1Q6VVB1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 PCDHB17P-201ENST00000539533 2393 ntBASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 RNA5SP419-201ENST00000515908 135 ntBASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AC012640.2-201ENST00000561606 901 ntBASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AL031008.1-201ENST00000619963 541 ntBASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 AC078925.2-201ENST00000624013 1973 ntBASIC15.2■□□□□ 0.02
NHLRC1Q6VVB1 HYMAI-201ENST00000635591 3347 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms