Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 TPRX2P-201ENST00000535362 881 ntBASIC17.6■□□□□ 0.41
CHD9Q3L8U1 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 AC092337.1-201ENST00000568699 1129 ntBASIC17.6■□□□□ 0.41
CHD9Q3L8U1 RN7SL190P-201ENST00000582519 257 ntBASIC17.6■□□□□ 0.41
CHD9Q3L8U1 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 FRMD8P1-201ENST00000440433 1524 ntBASIC17.59■□□□□ 0.41
CHD9Q3L8U1 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CHD9Q3L8U1 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHD9Q3L8U1 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 RN7SL618P-201ENST00000477850 296 ntBASIC17.58■□□□□ 0.4
CHD9Q3L8U1 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 AC021097.1-201ENST00000607902 574 ntBASIC17.58■□□□□ 0.4
CHD9Q3L8U1 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 AC087289.5-201ENST00000586076 3175 ntBASIC17.58■□□□□ 0.4
CHD9Q3L8U1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.58■□□□□ 0.4
CHD9Q3L8U1 AL033527.5-202ENST00000641632 1098 ntBASIC17.58■□□□□ 0.4
CHD9Q3L8U1 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 MPDU1-223ENST00000582151 728 ntBASIC17.57■□□□□ 0.4
CHD9Q3L8U1 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms