Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGCS1Q01581 TERC-201ENST00000602385 541 ntBASIC16.31■□□□□ 0.2
HMGCS1Q01581 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGCS1Q01581 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGCS1Q01581 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGCS1Q01581 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGCS1Q01581 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGCS1Q01581 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGCS1Q01581 ALOX12P2-203ENST00000570921 1945 ntBASIC16.31■□□□□ 0.2
HMGCS1Q01581 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGCS1Q01581 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGCS1Q01581 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 KRT18P31-201ENST00000506277 1292 ntBASIC16.3■□□□□ 0.2
HMGCS1Q01581 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 PRELID1P1-202ENST00000567272 903 ntBASIC16.3■□□□□ 0.2
HMGCS1Q01581 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 AL139288.1-201ENST00000623748 933 ntBASIC16.3■□□□□ 0.2
HMGCS1Q01581 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGCS1Q01581 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGCS1Q01581 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SART3-203ENST00000546611 1184 ntBASIC16.29■□□□□ 0.2
HMGCS1Q01581 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGCS1Q01581 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGCS1Q01581 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 KRT8P49-201ENST00000604166 1432 ntBASIC16.28■□□□□ 0.2
HMGCS1Q01581 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 LINC02199-201ENST00000506655 2702 ntBASIC16.28■□□□□ 0.2
HMGCS1Q01581 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGCS1Q01581 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGCS1Q01581 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms