Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
PCNAP12004 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.52■□□□□ 0.24
PCNAP12004 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
PCNAP12004 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.52■□□□□ 0.24
PCNAP12004 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.52■□□□□ 0.24
PCNAP12004 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.52■□□□□ 0.24
PCNAP12004 AL139288.1-201ENST00000623748 933 ntBASIC16.52■□□□□ 0.24
PCNAP12004 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PCNAP12004 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCNAP12004 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
PCNAP12004 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
PCNAP12004 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCNAP12004 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PCNAP12004 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 AC124947.2-201ENST00000547118 1133 ntBASIC16.51■□□□□ 0.23
PCNAP12004 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 AL022326.1-202ENST00000641533 845 ntBASIC16.51■□□□□ 0.23
PCNAP12004 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PCNAP12004 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.51■□□□□ 0.23
PCNAP12004 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCNAP12004 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.51■□□□□ 0.23
PCNAP12004 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCNAP12004 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PCNAP12004 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
PCNAP12004 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.5■□□□□ 0.23
PCNAP12004 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.5■□□□□ 0.23
PCNAP12004 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.5■□□□□ 0.23
PCNAP12004 AC064862.7-201ENST00000604520 867 ntBASIC16.5■□□□□ 0.23
PCNAP12004 AL355877.3-201ENST00000622820 899 ntBASIC16.5■□□□□ 0.23
PCNAP12004 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PCNAP12004 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
PCNAP12004 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PCNAP12004 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.5■□□□□ 0.23
PCNAP12004 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCNAP12004 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms