Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.988e-6■■■■■ 107
SF3B1O75533 TCEA1-210ENST00000522397 852 ntTSL 321.17■□□□□ 0.988e-6■■■■■ 107
SF3B1O75533 MED26-205ENST00000600060 478 ntTSL 221.15■□□□□ 0.988e-6■■■■■ 107
SF3B1O75533 CD33-207ENST00000601785 1522 ntTSL 521.13■□□□□ 0.978e-6■■■■■ 107
SF3B1O75533 KANSL3-202ENST00000416138 552 ntTSL 421.12■□□□□ 0.978e-6■■■■■ 107
SF3B1O75533 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.11■□□□□ 0.978e-6■■■■■ 107
SF3B1O75533 C19orf12-202ENST00000342680 578 ntTSL 521.09■□□□□ 0.978e-6■■■■■ 107
SF3B1O75533 CTNNA1-213ENST00000519113 859 ntTSL 321.06■□□□□ 0.968e-6■■■■■ 107
SF3B1O75533 NUBP2-215ENST00000568834 1173 ntTSL 221.05■□□□□ 0.968e-6■■■■■ 107
SF3B1O75533 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.05■□□□□ 0.968e-6■■■■■ 107
SF3B1O75533 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.05■□□□□ 0.968e-6■■■■■ 107
SF3B1O75533 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.03■□□□□ 0.968e-6■■■■■ 107
SF3B1O75533 IMP4-208ENST00000460766 2379 ntTSL 1 (best)21■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 HYOU1-213ENST00000533381 694 ntTSL 320.98■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 HNRNPUL1-219ENST00000601336 754 ntTSL 220.98■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 SPRED2-202ENST00000421087 701 ntTSL 320.98■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.97■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 CTDSP1-213ENST00000496785 460 ntTSL 520.97■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 RAB35-204ENST00000540803 551 ntTSL 220.96■□□□□ 0.958e-6■■■■■ 107
SF3B1O75533 SPINT1-204ENST00000563656 1072 ntTSL 220.94■□□□□ 0.948e-6■■■■■ 107
SF3B1O75533 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.92■□□□□ 0.948e-6■■■■■ 107
SF3B1O75533 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.948e-6■■■■■ 107
SF3B1O75533 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.89■□□□□ 0.938e-6■■■■■ 107
SF3B1O75533 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.938e-6■■■■■ 107
SF3B1O75533 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.938e-6■■■■■ 107
SF3B1O75533 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.81■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.81■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 AC011511.1-202ENST00000493771 885 ntTSL 520.8■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 IQCE-211ENST00000470731 2251 ntTSL 1 (best)20.79■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.78■□□□□ 0.928e-6■■■■■ 107
SF3B1O75533 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.918e-6■■■■■ 107
SF3B1O75533 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.918e-7■■■■■ 107
SF3B1O75533 TMEM41A-202ENST00000382227 541 ntTSL 420.72■□□□□ 0.918e-6■■■■■ 107
SF3B1O75533 BYSL-204ENST00000489290 1153 ntTSL 320.72■□□□□ 0.918e-6■■■■■ 107
SF3B1O75533 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 NDUFV1-228ENST00000534352 573 ntTSL 220.7■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 KIFC2-202ENST00000529644 695 ntTSL 320.7■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 CHPT1-202ENST00000546490 476 ntTSL 220.69■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.68■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 USP19-201ENST00000306026 1905 ntTSL 220.68■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 COPS7A-218ENST00000543939 1728 ntTSL 320.66■□□□□ 0.98e-6■■■■■ 107
SF3B1O75533 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.898e-6■■■■■ 107
SF3B1O75533 PIH1D1-216ENST00000598889 615 ntTSL 520.62■□□□□ 0.891e-10■■■■■ 107
SF3B1O75533 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.62■□□□□ 0.891e-10■■■■■ 107
SF3B1O75533 TBCD-209ENST00000572794 1380 ntTSL 220.61■□□□□ 0.898e-6■■■■■ 107
SF3B1O75533 PPP2R1B-209ENST00000531373 553 ntTSL 420.58■□□□□ 0.898e-6■■■■■ 107
SF3B1O75533 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.57■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 CHERP-204ENST00000546538 1429 ntTSL 1 (best)20.57■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 COL9A3-203ENST00000462700 1237 ntTSL 320.56■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 TEX261-202ENST00000433258 758 ntTSL 220.55■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 KIF1BP-213ENST00000637738 2269 ntTSL 520.53■□□□□ 0.888e-6■■■■■ 107
SF3B1O75533 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.878e-6■■■■■ 107
SF3B1O75533 NECAB3-210ENST00000484824 596 ntTSL 220.51■□□□□ 0.878e-6■■■■■ 107
SF3B1O75533 RABGGTA-208ENST00000558954 570 ntTSL 420.51■□□□□ 0.878e-6■■■■■ 107
SF3B1O75533 ARHGEF7-215ENST00000483189 1205 ntTSL 220.48■□□□□ 0.878e-6■■■■■ 107
SF3B1O75533 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.46■□□□□ 0.878e-6■■■■■ 107
SF3B1O75533 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.46■□□□□ 0.878e-6■■■■■ 107
SF3B1O75533 IL15RA-202ENST00000379972 1631 ntTSL 520.45■□□□□ 0.868e-6■■■■■ 107
SF3B1O75533 SEPT9-243ENST00000592407 509 ntTSL 220.45■□□□□ 0.868e-6■■■■■ 107
SF3B1O75533 AP1G1-210ENST00000565412 619 ntTSL 320.45■□□□□ 0.868e-6■■■■■ 107
SF3B1O75533 ZNF148-208ENST00000495019 763 ntTSL 520.44■□□□□ 0.868e-6■■■■■ 107
SF3B1O75533 SAFB-204ENST00000586934 995 ntTSL 520.44■□□□□ 0.868e-6■■■■■ 107
SF3B1O75533 DHRS3-201ENST00000430996 826 ntTSL 320.44■□□□□ 0.868e-6■■■■■ 107
SF3B1O75533 PRPF40B-206ENST00000547764 803 ntTSL 320.39■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 PALM-210ENST00000593172 2489 ntTSL 220.38■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 SMIM29-210ENST00000637920 1093 ntTSL 220.36■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 AP1B1-210ENST00000473606 560 ntTSL 220.35■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 AP1G1-214ENST00000567583 606 ntTSL 220.35■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 PPP6R2-207ENST00000470046 1211 ntTSL 220.34■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 SPATS2L-216ENST00000444012 605 ntTSL 420.34■□□□□ 0.858e-6■■■■■ 107
SF3B1O75533 FLOT2-212ENST00000593158 752 ntTSL 520.32■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 AP1G1-205ENST00000563104 882 ntTSL 420.32■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 MYLK3-206ENST00000569810 489 ntTSL 420.31■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 ARID5A-206ENST00000497920 2357 ntTSL 520.31■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 AP1G1-219ENST00000569975 561 ntTSL 420.27■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 TRPT1-207ENST00000539436 1726 ntTSL 220.27■□□□□ 0.848e-6■■■■■ 107
SF3B1O75533 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 SPINT1-210ENST00000568823 940 ntTSL 320.26■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 HYOU1-211ENST00000532421 582 ntTSL 220.26■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 MCF2L2-211ENST00000482017 570 ntTSL 420.24■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 USP19-215ENST00000491859 919 ntTSL 320.23■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 MPP3-205ENST00000479797 488 ntTSL 320.23■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 AXL-205ENST00000599659 1708 ntTSL 1 (best)20.22■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 ARHGAP28-213ENST00000583410 462 ntTSL 520.22■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 CARHSP1-206ENST00000563815 1913 ntTSL 220.22■□□□□ 0.838e-6■■■■■ 107
SF3B1O75533 FDX2-201ENST00000343376 614 ntTSL 320.2■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 LAMTOR5-202ENST00000464240 1830 ntTSL 220.19■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.19■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.18■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 AL136531.2-201ENST00000618770 1164 ntTSL 220.17■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 UXS1-206ENST00000441952 570 ntTSL 220.17■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 UXS1-208ENST00000457835 682 ntTSL 420.17■□□□□ 0.828e-6■■■■■ 107
SF3B1O75533 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.14■□□□□ 0.818e-6■■■■■ 107
SF3B1O75533 EME2-204ENST00000565326 434 ntTSL 220.13■□□□□ 0.818e-6■■■■■ 107
Retrieved 100 of 46,956 protein–RNA pairs in 1265.4 ms