Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TCRBV7S3A2A0A539 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 PAWRP1-201ENST00000451083 565 ntBASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 AL139288.1-201ENST00000623748 933 ntBASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TCRBV7S3A2A0A539 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 RBM17P3-201ENST00000417687 1192 ntBASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 FGFR3P6-201ENST00000457012 610 ntBASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TCRBV7S3A2A0A539 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 AC007950.2-201ENST00000615045 2347 ntBASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 UPK3BP1-201ENST00000428678 509 ntBASIC17.16■□□□□ 0.34
TCRBV7S3A2A0A539 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms