Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC4Q9NTJ3 LINC00895-201ENST00000629028 1637 ntBASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 PC-204ENST00000524491 1714 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 AC010654.1-201ENST00000615722 808 ntBASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 UBALD1-205ENST00000590891 2641 ntBASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC4Q9NTJ3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 MPDU1-223ENST00000582151 728 ntBASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC4Q9NTJ3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 SLC22A20-204ENST00000530038 1673 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 AC104109.2-201ENST00000602919 1418 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 IL9RP2-201ENST00000423948 1312 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 AC129492.6-201ENST00000611383 1305 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 PMS2P1-201ENST00000431037 1228 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 Z83851.2-201ENST00000609564 659 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms