Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MMP28Q9H239 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.01□□□□□ -0.01
MMP28Q9H239 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 AC022898.2-201ENST00000616822 1312 ntBASIC15□□□□□ -0.01
MMP28Q9H239 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15□□□□□ -0.01
MMP28Q9H239 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 AL023973.1-201ENST00000624619 620 ntBASIC15□□□□□ -0.01
MMP28Q9H239 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
MMP28Q9H239 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15□□□□□ -0.01
MMP28Q9H239 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MMP28Q9H239 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC14.99□□□□□ -0.01
MMP28Q9H239 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
MMP28Q9H239 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
MMP28Q9H239 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC14.99□□□□□ -0.01
MMP28Q9H239 AK4P3-201ENST00000418260 669 ntBASIC14.99□□□□□ -0.01
MMP28Q9H239 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 AC034232.1-201ENST00000506026 1064 ntBASIC14.99□□□□□ -0.01
MMP28Q9H239 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 MIR3917-201ENST00000580971 93 ntBASIC14.99□□□□□ -0.01
MMP28Q9H239 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
MMP28Q9H239 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.99□□□□□ -0.01
MMP28Q9H239 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.99□□□□□ -0.01
MMP28Q9H239 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
MMP28Q9H239 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.99□□□□□ -0.01
MMP28Q9H239 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MMP28Q9H239 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.98□□□□□ -0.01
MMP28Q9H239 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
MMP28Q9H239 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.98□□□□□ -0.01
MMP28Q9H239 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.98□□□□□ -0.01
MMP28Q9H239 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
MMP28Q9H239 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.98□□□□□ -0.01
MMP28Q9H239 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.98□□□□□ -0.01
MMP28Q9H239 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MMP28Q9H239 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.98□□□□□ -0.01
MMP28Q9H239 GCSHP2-201ENST00000560971 527 ntBASIC14.98□□□□□ -0.01
MMP28Q9H239 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms