Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 AC004461.1-201ENST00000412461 403 ntBASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAIPQ9BWF2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 AL645939.2-201ENST00000427340 991 ntBASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 FAM86C2P-203ENST00000528684 1004 ntBASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 AC022145.2-201ENST00000598203 171 ntBASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 AC099522.2-201ENST00000607001 744 ntBASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAIPQ9BWF2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 EGFEM1P-202ENST00000431685 1563 ntBASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms