Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NEK3P51956 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
NEK3P51956 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NEK3P51956 AL603756.1-201ENST00000606511 2163 ntBASIC17.49■□□□□ 0.39
NEK3P51956 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
NEK3P51956 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
NEK3P51956 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NEK3P51956 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NEK3P51956 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.49■□□□□ 0.39
NEK3P51956 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
NEK3P51956 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 AC097637.2-201ENST00000624096 1997 ntBASIC17.48■□□□□ 0.39
NEK3P51956 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
NEK3P51956 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.48■□□□□ 0.39
NEK3P51956 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.48■□□□□ 0.39
NEK3P51956 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.48■□□□□ 0.39
NEK3P51956 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.48■□□□□ 0.39
NEK3P51956 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.48■□□□□ 0.39
NEK3P51956 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.48■□□□□ 0.39
NEK3P51956 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.48■□□□□ 0.39
NEK3P51956 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NEK3P51956 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.47■□□□□ 0.39
NEK3P51956 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NEK3P51956 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.47■□□□□ 0.39
NEK3P51956 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 AC034105.1-201ENST00000563488 319 ntBASIC17.47■□□□□ 0.39
NEK3P51956 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.47■□□□□ 0.39
NEK3P51956 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.47■□□□□ 0.39
NEK3P51956 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
NEK3P51956 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 AC092053.1-201ENST00000605787 1936 ntBASIC17.47■□□□□ 0.39
NEK3P51956 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NEK3P51956 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.47■□□□□ 0.39
NEK3P51956 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.46■□□□□ 0.39
NEK3P51956 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 AC006504.4-201ENST00000592118 1568 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms