Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ARHGEF10-204ENST00000398564 5480 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 AC005840.4-201ENST00000541242 2494 ntBASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 AC233992.3-201ENST00000607491 485 ntBASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 CCDC144A-204ENST00000360524 5830 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 KRT8P8-201ENST00000434750 1448 ntBASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 CACNA1G-204ENST00000359106 7648 ntAPPRIS P4 TSL 1 (best) BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC9.38□□□□□ -0.91
CHKB-CPT1BH3BT56 ESR1-201ENST00000206249 6458 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 ESR1-207ENST00000440973 6466 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 NTRK2-208ENST00000395882 7111 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 MPST-204ENST00000404393 1329 ntTSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 HERC2P3-204ENST00000426501 5995 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 AC133963.1-201ENST00000504166 1679 ntBASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SNCG-201ENST00000348795 684 ntTSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 KRT16P3-201ENST00000439127 1283 ntBASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 BRWD1-AS2-201ENST00000603064 1028 ntBASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 LCMT2-201ENST00000305641 6957 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 AC117489.1-201ENST00000625169 3217 ntBASIC9.37□□□□□ -0.91
CHKB-CPT1BH3BT56 PTCHD1-201ENST00000379361 13714 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms