RNA–Protein interactions for RNA: ENST00000360524.12

CCDC144A-204, Transcript of coiled-coil domain containing 144A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC144A, Length 5,830 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-204ENST00000360524 DCAF8L2P0C7V8 631 aa21.12■□□□□ 0.97
CCDC144A-204ENST00000360524 NISCHQ9Y2I1 1504 aa20.06■□□□□ 0.8
CCDC144A-204ENST00000360524 SUPT5HO00267 1087 aaKnown RBP20■□□□□ 0.79
CCDC144A-204ENST00000360524 EHMT2Q96KQ7 1210 aa19.73■□□□□ 0.75
CCDC144A-204ENST00000360524 SHROOM4Q9ULL8 1493 aa19.62■□□□□ 0.73
CCDC144A-204ENST00000360524 PELP1Q8IZL8 1130 aaKnown RBP19.54■□□□□ 0.72
CCDC144A-204ENST00000360524 MYT1Q01538 1121 aa19.08■□□□□ 0.65
CCDC144A-204ENST00000360524 APLP2Q06481 763 aa19.08■□□□□ 0.64
CCDC144A-204ENST00000360524 TTBK1Q5TCY1 1321 aaPredicted RBP19.07■□□□□ 0.64
CCDC144A-204ENST00000360524 FAM9AQ8IZU1 332 aaPredicted RBP18.97■□□□□ 0.63
CCDC144A-204ENST00000360524 PCGF6Q9BYE7 350 aa18.93■□□□□ 0.62
CCDC144A-204ENST00000360524 ERICH6Q7L0X2 663 aa18.83■□□□□ 0.61
CCDC144A-204ENST00000360524 CENPBP07199 599 aaPredicted RBP18.77■□□□□ 0.6
CCDC144A-204ENST00000360524 RANGAP1P46060 587 aaPredicted RBP18.71■□□□□ 0.59
CCDC144A-204ENST00000360524 CCER1Q8TC90 406 aaPredicted RBP18.6■□□□□ 0.57
CCDC144A-204ENST00000360524 TRIM41Q8WV44 630 aa18.51■□□□□ 0.55
CCDC144A-204ENST00000360524 YTHDC1Q96MU7 727 aaKnown RBP18.47■□□□□ 0.55
CCDC144A-204ENST00000360524 ATP1B4Q9UN42 357 aaPredicted RBP18.45■□□□□ 0.54
CCDC144A-204ENST00000360524 ZEB1P37275 1124 aaPredicted RBP18.44■□□□□ 0.54
CCDC144A-204ENST00000360524 UBTFP17480 764 aaKnown RBP18.33■□□□□ 0.52
CCDC144A-204ENST00000360524 PPARGC1BQ86YN6 1023 aaKnown RBP18.28■□□□□ 0.52
CCDC144A-204ENST00000360524 NEFLP07196 543 aa18.21■□□□□ 0.51
CCDC144A-204ENST00000360524 HRCP23327 699 aa17.95■□□□□ 0.46
CCDC144A-204ENST00000360524 TRIM26Q12899 539 aaPredicted RBP17.89■□□□□ 0.46
CCDC144A-204ENST00000360524 ITGAEP38570 1179 aa17.87■□□□□ 0.45
CCDC144A-204ENST00000360524 POLR3GLQ9BT43 218 aa17.87■□□□□ 0.45
CCDC144A-204ENST00000360524 CNGB1Q14028 1251 aaPredicted RBP17.82■□□□□ 0.44
CCDC144A-204ENST00000360524 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.81■□□□□ 0.44
CCDC144A-204ENST00000360524 HNRNPUL2Q1KMD3 747 aaKnown RBP17.81■□□□□ 0.44
CCDC144A-204ENST00000360524 MYT1LQ9UL68 1186 aa17.79■□□□□ 0.44
CCDC144A-204ENST00000360524 DAXXQ9UER7 740 aaPredicted RBP17.77■□□□□ 0.43
CCDC144A-204ENST00000360524 LOC105371045A0A1W2PR82 267 aa17.76■□□□□ 0.43
CCDC144A-204ENST00000360524 RTL5Q5HYW3 569 aaPredicted RBP17.59■□□□□ 0.41
CCDC144A-204ENST00000360524 CHIC1Q5VXU3 224 aa17.56■□□□□ 0.4
CCDC144A-204ENST00000360524 SLC4A1APQ9BWU0 796 aaKnown RBP17.46■□□□□ 0.39
CCDC144A-204ENST00000360524 DIEXFQ68CQ4 756 aaKnown RBP17.46■□□□□ 0.39
CCDC144A-204ENST00000360524 ABCC9O60706 1549 aa17.43■□□□□ 0.38
CCDC144A-204ENST00000360524 GTF3C3Q9Y5Q9 886 aa17.41■□□□□ 0.38
CCDC144A-204ENST00000360524 ZNF316A6NFI3 1004 aaPredicted RBP17.4■□□□□ 0.38
CCDC144A-204ENST00000360524 PABPN1Q86U42 306 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC144A-204ENST00000360524 BCANQ96GW7 911 aa17.38■□□□□ 0.37
CCDC144A-204ENST00000360524 CLSPNQ9HAW4 1339 aa17.37■□□□□ 0.37
CCDC144A-204ENST00000360524 FAM50AQ14320 339 aaKnown RBP17.32■□□□□ 0.36
CCDC144A-204ENST00000360524 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
CCDC144A-204ENST00000360524 TRIM52Q96A61 297 aa17.24■□□□□ 0.35
CCDC144A-204ENST00000360524 ZNF326Q5BKZ1 582 aaKnown RBP17.11■□□□□ 0.33
CCDC144A-204ENST00000360524 FBLN2P98095 1184 aa17.1■□□□□ 0.33
CCDC144A-204ENST00000360524 ACIN1Q9UKV3 1341 aaKnown RBP17.09■□□□□ 0.33
CCDC144A-204ENST00000360524 CDK11AQ9UQ88 783 aaPredicted RBP17.09■□□□□ 0.33
CCDC144A-204ENST00000360524 EIF5BO60841 1220 aaKnown RBP17.07■□□□□ 0.32
CCDC144A-204ENST00000360524 BCL11AQ9H165 835 aa17.07■□□□□ 0.32
CCDC144A-204ENST00000360524 ANP32CO43423 234 aa17.05■□□□□ 0.32
CCDC144A-204ENST00000360524 CANXP27824 592 aaKnown RBP16.91■□□□□ 0.3
CCDC144A-204ENST00000360524 P3H3Q8IVL6 736 aa16.9■□□□□ 0.3
CCDC144A-204ENST00000360524 SLC24A1O60721 1099 aa16.9■□□□□ 0.3
CCDC144A-204ENST00000360524 ZBTB47Q9UFB7 747 aaPredicted RBP16.89■□□□□ 0.29
CCDC144A-204ENST00000360524 GLIPR1L2Q4G1C9 344 aa16.89■□□□□ 0.29
CCDC144A-204ENST00000360524 ARID3CA6NKF2 412 aa16.87■□□□□ 0.29
CCDC144A-204ENST00000360524 NPM2Q86SE8 214 aaKnown RBP16.87■□□□□ 0.29
CCDC144A-204ENST00000360524 CSRNP3Q8WYN3 585 aa16.86■□□□□ 0.29
CCDC144A-204ENST00000360524 ANP32AP39687 249 aaKnown RBP16.83■□□□□ 0.28
CCDC144A-204ENST00000360524 ZNF777Q9ULD5 760 aaPredicted RBP16.8■□□□□ 0.28
CCDC144A-204ENST00000360524 NEFMP07197 916 aa16.75■□□□□ 0.27
CCDC144A-204ENST00000360524 SCRIBQ14160 1630 aa16.75■□□□□ 0.27
CCDC144A-204ENST00000360524 FKBP8Q14318 412 aa16.72■□□□□ 0.27
CCDC144A-204ENST00000360524 SCAF1Q9H7N4 1312 aaKnown RBP16.68■□□□□ 0.26
CCDC144A-204ENST00000360524 ESF1Q9H501 851 aaKnown RBP16.65■□□□□ 0.26
CCDC144A-204ENST00000360524 NBR1Q14596 966 aa16.61■□□□□ 0.25
CCDC144A-204ENST00000360524 SALL2Q9Y467 1007 aaPredicted RBP16.59■□□□□ 0.25
CCDC144A-204ENST00000360524 FAM9BQ8IZU0 186 aa16.58■□□□□ 0.25
CCDC144A-204ENST00000360524 ZCCHC6Q5VYS8 1495 aaKnown RBP16.57■□□□□ 0.24
CCDC144A-204ENST00000360524 NPM1P06748 294 aaKnown RBP eCLIP16.57■□□□□ 0.24
CCDC144A-204ENST00000360524 HNRNPUQ00839 825 aaKnown RBP eCLIP16.57■□□□□ 0.24
CCDC144A-204ENST00000360524 CHGAP10645 457 aaKnown RBP16.57■□□□□ 0.24
CCDC144A-204ENST00000360524 STAG3Q9UJ98 1225 aa16.57■□□□□ 0.24
CCDC144A-204ENST00000360524 TONSLQ96HA7 1378 aa16.56■□□□□ 0.24
CCDC144A-204ENST00000360524 ANP32BQ92688 251 aaKnown RBP16.56■□□□□ 0.24
CCDC144A-204ENST00000360524 DDX10Q13206 875 aaKnown RBP16.55■□□□□ 0.24
CCDC144A-204ENST00000360524 HSP90AA1P07900 732 aaKnown RBP16.52■□□□□ 0.24
CCDC144A-204ENST00000360524 ARXQ96QS3 562 aa16.51■□□□□ 0.23
CCDC144A-204ENST00000360524 PLPPR3Q6T4P5 718 aa16.46■□□□□ 0.23
CCDC144A-204ENST00000360524 ANP32EQ9BTT0 268 aa16.46■□□□□ 0.23
CCDC144A-204ENST00000360524 IRX6P78412 446 aaPredicted RBP16.46■□□□□ 0.22
CCDC144A-204ENST00000360524 CHIC2Q9UKJ5 165 aa16.43■□□□□ 0.22
CCDC144A-204ENST00000360524 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.42■□□□□ 0.22
CCDC144A-204ENST00000360524 UPF2Q9HAU5 1272 aaKnown RBP16.41■□□□□ 0.22
CCDC144A-204ENST00000360524 CCDC180Q9P1Z9 1646 aa16.4■□□□□ 0.22
CCDC144A-204ENST00000360524 CCDC136Q96JN2 1154 aa16.4■□□□□ 0.22
CCDC144A-204ENST00000360524 DCAF1Q9Y4B6 1507 aa16.38■□□□□ 0.21
CCDC144A-204ENST00000360524 HIRIP3Q9BW71 556 aaPredicted RBP16.38■□□□□ 0.21
CCDC144A-204ENST00000360524 TSPY4P0CV99 314 aa16.37■□□□□ 0.21
CCDC144A-204ENST00000360524 TSPY10P0CW01 314 aa16.37■□□□□ 0.21
CCDC144A-204ENST00000360524 CHMP7Q8WUX9 453 aaPredicted RBP16.37■□□□□ 0.21
CCDC144A-204ENST00000360524 MTUS2Q5JR59 1369 aa16.36■□□□□ 0.21
CCDC144A-204ENST00000360524 MIER1Q8N108 512 aa16.34■□□□□ 0.21
CCDC144A-204ENST00000360524 TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
CCDC144A-204ENST00000360524 RB1CC1Q8TDY2 1594 aa16.31■□□□□ 0.2
CCDC144A-204ENST00000360524 KDM2AQ9Y2K7 1162 aa16.3■□□□□ 0.2
CCDC144A-204ENST00000360524 MRS2Q9HD23 443 aa16.29■□□□□ 0.2
CCDC144A-204ENST00000360524 WDR43Q15061 677 aaKnown RBP eCLIP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms