Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PDZRN3Q9UPQ7 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PDZRN3Q9UPQ7 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PDZRN3Q9UPQ7 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.08
PDZRN3Q9UPQ7 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 AL139400.1-201ENST00000366220 510 ntBASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 BCRP1-201ENST00000444246 691 ntBASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 AC002558.1-201ENST00000488906 803 ntBASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 HLA-J-203ENST00000494367 1087 ntBASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 AC019129.2-201ENST00000609837 1235 ntBASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
PDZRN3Q9UPQ7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 AC025678.2-201ENST00000562061 970 ntBASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 AC004449.1-201ENST00000564240 433 ntBASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PDZRN3Q9UPQ7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 AC025580.3-201ENST00000617932 1424 ntBASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.8■■□□□ 1.08
PDZRN3Q9UPQ7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.79■■□□□ 1.08
PDZRN3Q9UPQ7 AC092053.1-201ENST00000605787 1936 ntBASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms