Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.05■□□□□ 0.64
TPM4P67936 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.05■□□□□ 0.64
TPM4P67936 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
TPM4P67936 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.05■□□□□ 0.64
TPM4P67936 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TPM4P67936 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TPM4P67936 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
TPM4P67936 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
TPM4P67936 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.04■□□□□ 0.64
TPM4P67936 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 HBZP1-201ENST00000354915 429 ntBASIC19.04■□□□□ 0.64
TPM4P67936 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 AC125634.1-201ENST00000438758 1403 ntBASIC19.04■□□□□ 0.64
TPM4P67936 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.04■□□□□ 0.64
TPM4P67936 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.04■□□□□ 0.64
TPM4P67936 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 AC009336.1-201ENST00000608941 1553 ntBASIC19.04■□□□□ 0.64
TPM4P67936 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TPM4P67936 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
TPM4P67936 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TPM4P67936 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.03■□□□□ 0.64
TPM4P67936 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.03■□□□□ 0.64
TPM4P67936 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.03■□□□□ 0.64
TPM4P67936 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.03■□□□□ 0.64
TPM4P67936 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 BX664615.1-201ENST00000443558 458 ntBASIC19.03■□□□□ 0.64
TPM4P67936 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.03■□□□□ 0.64
TPM4P67936 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.03■□□□□ 0.64
TPM4P67936 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.03■□□□□ 0.64
TPM4P67936 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.03■□□□□ 0.64
TPM4P67936 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TPM4P67936 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TPM4P67936 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms