Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PROM1O43490 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.12■□□□□ 0.17
PROM1O43490 AC136632.2-201ENST00000512891 861 ntBASIC16.12■□□□□ 0.17
PROM1O43490 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.12■□□□□ 0.17
PROM1O43490 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.12■□□□□ 0.17
PROM1O43490 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 AF228730.7-201ENST00000641842 219 ntBASIC16.12■□□□□ 0.17
PROM1O43490 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PROM1O43490 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.12■□□□□ 0.17
PROM1O43490 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.12■□□□□ 0.17
PROM1O43490 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 AL391005.1-201ENST00000623953 2435 ntBASIC16.11■□□□□ 0.17
PROM1O43490 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.11■□□□□ 0.17
PROM1O43490 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PROM1O43490 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.11■□□□□ 0.17
PROM1O43490 MRPL3P1-201ENST00000400109 1033 ntBASIC16.11■□□□□ 0.17
PROM1O43490 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 AL031284.1-201ENST00000419297 478 ntBASIC16.11■□□□□ 0.17
PROM1O43490 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.11■□□□□ 0.17
PROM1O43490 RPS15P9-201ENST00000494093 319 ntBASIC16.11■□□□□ 0.17
PROM1O43490 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.11■□□□□ 0.17
PROM1O43490 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.11■□□□□ 0.17
PROM1O43490 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PROM1O43490 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PROM1O43490 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.11■□□□□ 0.17
PROM1O43490 PI4KAP1-204ENST00000612579 1703 ntBASIC16.11■□□□□ 0.17
PROM1O43490 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
PROM1O43490 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
PROM1O43490 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.1■□□□□ 0.17
PROM1O43490 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.1■□□□□ 0.17
PROM1O43490 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.1■□□□□ 0.17
PROM1O43490 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.1■□□□□ 0.17
PROM1O43490 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.1■□□□□ 0.17
PROM1O43490 AL356488.2-201ENST00000602755 427 ntBASIC16.1■□□□□ 0.17
PROM1O43490 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 MIR1199-201ENST00000621445 119 ntBASIC16.1■□□□□ 0.17
PROM1O43490 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PROM1O43490 TUBB8P12-201ENST00000308911 1335 ntBASIC16.1■□□□□ 0.17
PROM1O43490 TUBB7P-202ENST00000428444 1305 ntBASIC16.1■□□□□ 0.17
PROM1O43490 TUBB8P7-204ENST00000567960 1332 ntBASIC16.1■□□□□ 0.17
PROM1O43490 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PROM1O43490 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 AC106886.4-201ENST00000623557 2502 ntBASIC16.1■□□□□ 0.17
PROM1O43490 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
PROM1O43490 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PROM1O43490 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms