Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
RNF38Q9H0F5 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.08■■□□□ 1.61
RNF38Q9H0F5 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF38Q9H0F5 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF38Q9H0F5 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RNF38Q9H0F5 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF38Q9H0F5 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.07■■□□□ 1.6
RNF38Q9H0F5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RNF38Q9H0F5 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 AC103724.3-201ENST00000564481 992 ntBASIC25.06■■□□□ 1.6
RNF38Q9H0F5 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RNF38Q9H0F5 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
RNF38Q9H0F5 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RNF38Q9H0F5 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.05■■□□□ 1.6
RNF38Q9H0F5 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
RNF38Q9H0F5 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
RNF38Q9H0F5 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.04■■□□□ 1.6
RNF38Q9H0F5 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
RNF38Q9H0F5 KRT18P10-201ENST00000388836 1287 ntBASIC25.04■■□□□ 1.6
RNF38Q9H0F5 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.04■■□□□ 1.6
RNF38Q9H0F5 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
RNF38Q9H0F5 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.04■■□□□ 1.6
RNF38Q9H0F5 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RNF38Q9H0F5 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RNF38Q9H0F5 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 AC009299.2-201ENST00000482477 511 ntBASIC25.02■■□□□ 1.6
RNF38Q9H0F5 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF38Q9H0F5 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.01■■□□□ 1.59
RNF38Q9H0F5 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RNF38Q9H0F5 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
RNF38Q9H0F5 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25■■□□□ 1.59
RNF38Q9H0F5 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25■■□□□ 1.59
RNF38Q9H0F5 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25■■□□□ 1.59
RNF38Q9H0F5 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
RNF38Q9H0F5 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25■■□□□ 1.59
RNF38Q9H0F5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.99■■□□□ 1.59
RNF38Q9H0F5 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RNF38Q9H0F5 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
RNF38Q9H0F5 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RNF38Q9H0F5 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
RNF38Q9H0F5 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.97■■□□□ 1.59
RNF38Q9H0F5 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.97■■□□□ 1.59
RNF38Q9H0F5 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.97■■□□□ 1.59
RNF38Q9H0F5 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
RNF38Q9H0F5 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
RNF38Q9H0F5 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
RNF38Q9H0F5 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.96■■□□□ 1.59
RNF38Q9H0F5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.96■■□□□ 1.59
RNF38Q9H0F5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.96■■□□□ 1.59
RNF38Q9H0F5 AL031848.2-201ENST00000607670 837 ntBASIC24.96■■□□□ 1.59
RNF38Q9H0F5 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.96■■□□□ 1.59
RNF38Q9H0F5 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
RNF38Q9H0F5 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
RNF38Q9H0F5 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF38Q9H0F5 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
RNF38Q9H0F5 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RNF38Q9H0F5 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
RNF38Q9H0F5 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.94■■□□□ 1.58
RNF38Q9H0F5 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.94■■□□□ 1.58
RNF38Q9H0F5 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.94■■□□□ 1.58
RNF38Q9H0F5 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RNF38Q9H0F5 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
RNF38Q9H0F5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.93■■□□□ 1.58
RNF38Q9H0F5 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
RNF38Q9H0F5 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
RNF38Q9H0F5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.93■■□□□ 1.58
RNF38Q9H0F5 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.93■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms