Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.11■■□□□ 1.29
COL28A1Q2UY09 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.11■■□□□ 1.29
COL28A1Q2UY09 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
COL28A1Q2UY09 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 RARRES2P6-201ENST00000567333 442 ntBASIC23.1■■□□□ 1.29
COL28A1Q2UY09 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL28A1Q2UY09 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.09■■□□□ 1.29
COL28A1Q2UY09 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.09■■□□□ 1.29
COL28A1Q2UY09 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
COL28A1Q2UY09 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL28A1Q2UY09 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 AC131281.2-201ENST00000520478 145 ntBASIC23.08■■□□□ 1.29
COL28A1Q2UY09 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 AC110285.6-201ENST00000617652 491 ntBASIC23.08■■□□□ 1.29
COL28A1Q2UY09 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL28A1Q2UY09 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
COL28A1Q2UY09 AL136116.3-201ENST00000402907 1138 ntBASIC23.07■■□□□ 1.28
COL28A1Q2UY09 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.07■■□□□ 1.28
COL28A1Q2UY09 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.07■■□□□ 1.28
COL28A1Q2UY09 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL28A1Q2UY09 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.07■■□□□ 1.28
COL28A1Q2UY09 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.06■■□□□ 1.28
COL28A1Q2UY09 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
COL28A1Q2UY09 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL28A1Q2UY09 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
COL28A1Q2UY09 TSPY9P-201ENST00000440215 945 ntBASIC23.04■■□□□ 1.28
COL28A1Q2UY09 TSPY11P-201ENST00000442607 1045 ntBASIC23.04■■□□□ 1.28
COL28A1Q2UY09 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.04■■□□□ 1.28
COL28A1Q2UY09 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
COL28A1Q2UY09 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL28A1Q2UY09 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 AC104564.3-201ENST00000582367 638 ntBASIC23.03■■□□□ 1.28
COL28A1Q2UY09 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
COL28A1Q2UY09 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.02■■□□□ 1.28
COL28A1Q2UY09 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.02■■□□□ 1.28
COL28A1Q2UY09 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL28A1Q2UY09 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
COL28A1Q2UY09 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL28A1Q2UY09 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23■■□□□ 1.27
COL28A1Q2UY09 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23■■□□□ 1.27
COL28A1Q2UY09 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
COL28A1Q2UY09 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23■■□□□ 1.27
COL28A1Q2UY09 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
COL28A1Q2UY09 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.99■■□□□ 1.27
COL28A1Q2UY09 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.99■■□□□ 1.27
COL28A1Q2UY09 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.99■■□□□ 1.27
COL28A1Q2UY09 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL28A1Q2UY09 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL28A1Q2UY09 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL28A1Q2UY09 AC096631.2-201ENST00000436136 790 ntBASIC22.98■■□□□ 1.27
COL28A1Q2UY09 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL28A1Q2UY09 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.98■■□□□ 1.27
COL28A1Q2UY09 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.98■■□□□ 1.27
COL28A1Q2UY09 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL28A1Q2UY09 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.97■■□□□ 1.27
COL28A1Q2UY09 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL28A1Q2UY09 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL28A1Q2UY09 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL28A1Q2UY09 AC087393.1-201ENST00000582896 145 ntBASIC22.96■■□□□ 1.27
COL28A1Q2UY09 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL28A1Q2UY09 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms