Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CLDN6P56747 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLDN6P56747 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLDN6P56747 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
CLDN6P56747 MIR638-201ENST00000385237 100 ntBASIC23.28■■□□□ 1.32
CLDN6P56747 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLDN6P56747 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.28■■□□□ 1.32
CLDN6P56747 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.28■■□□□ 1.32
CLDN6P56747 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLDN6P56747 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLDN6P56747 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLDN6P56747 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.27■■□□□ 1.32
CLDN6P56747 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.27■■□□□ 1.32
CLDN6P56747 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CLDN6P56747 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CLDN6P56747 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CLDN6P56747 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.26■■□□□ 1.31
CLDN6P56747 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CLDN6P56747 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CLDN6P56747 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.25■■□□□ 1.31
CLDN6P56747 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.25■■□□□ 1.31
CLDN6P56747 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CLDN6P56747 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CLDN6P56747 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
CLDN6P56747 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
CLDN6P56747 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CLDN6P56747 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.24■■□□□ 1.31
CLDN6P56747 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLDN6P56747 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CLDN6P56747 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.23■■□□□ 1.31
CLDN6P56747 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.23■■□□□ 1.31
CLDN6P56747 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.23■■□□□ 1.31
CLDN6P56747 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.23■■□□□ 1.31
CLDN6P56747 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.23■■□□□ 1.31
CLDN6P56747 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.23■■□□□ 1.31
CLDN6P56747 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.22■■□□□ 1.31
CLDN6P56747 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLDN6P56747 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CLDN6P56747 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CLDN6P56747 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.21■■□□□ 1.31
CLDN6P56747 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CLDN6P56747 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLDN6P56747 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLDN6P56747 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
CLDN6P56747 AL449106.1-201ENST00000608517 1980 ntBASIC23.21■■□□□ 1.31
CLDN6P56747 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.21■■□□□ 1.31
CLDN6P56747 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CLDN6P56747 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CLDN6P56747 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDN6P56747 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CLDN6P56747 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDN6P56747 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLDN6P56747 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.2■■□□□ 1.3
CLDN6P56747 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CLDN6P56747 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.2■■□□□ 1.3
CLDN6P56747 AC139426.1-201ENST00000568218 2529 ntBASIC23.2■■□□□ 1.3
CLDN6P56747 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CLDN6P56747 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDN6P56747 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDN6P56747 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.19■■□□□ 1.3
CLDN6P56747 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDN6P56747 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.19■■□□□ 1.3
CLDN6P56747 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDN6P56747 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.19■■□□□ 1.3
CLDN6P56747 AC120024.1-201ENST00000562672 995 ntBASIC23.19■■□□□ 1.3
CLDN6P56747 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.19■■□□□ 1.3
CLDN6P56747 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLDN6P56747 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLDN6P56747 KRT18P24-201ENST00000344739 1156 ntBASIC23.18■■□□□ 1.3
CLDN6P56747 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.18■■□□□ 1.3
CLDN6P56747 AC131281.2-201ENST00000520478 145 ntBASIC23.18■■□□□ 1.3
CLDN6P56747 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.18■■□□□ 1.3
CLDN6P56747 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.18■■□□□ 1.3
CLDN6P56747 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.18■■□□□ 1.3
CLDN6P56747 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
CLDN6P56747 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLDN6P56747 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLDN6P56747 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLDN6P56747 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDN6P56747 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDN6P56747 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.17■■□□□ 1.3
CLDN6P56747 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLDN6P56747 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLDN6P56747 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLDN6P56747 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.16■■□□□ 1.3
CLDN6P56747 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDN6P56747 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CLDN6P56747 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDN6P56747 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLDN6P56747 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
CLDN6P56747 AC022616.5-201ENST00000518796 181 ntBASIC23.15■■□□□ 1.3
CLDN6P56747 AL139246.5-201ENST00000606645 996 ntBASIC23.15■■□□□ 1.3
CLDN6P56747 AC137630.3-201ENST00000607245 391 ntBASIC23.15■■□□□ 1.3
CLDN6P56747 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLDN6P56747 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.15■■□□□ 1.3
CLDN6P56747 AC021242.3-201ENST00000607598 1377 ntBASIC23.14■■□□□ 1.3
CLDN6P56747 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CLDN6P56747 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLDN6P56747 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLDN6P56747 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms