Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL1P09341 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL1P09341 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.56■□□□□ 0.56
CXCL1P09341 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.56■□□□□ 0.56
CXCL1P09341 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC18.55■□□□□ 0.56
CXCL1P09341 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC18.55■□□□□ 0.56
CXCL1P09341 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.55■□□□□ 0.56
CXCL1P09341 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL1P09341 AC010501.1-201ENST00000606270 1962 ntBASIC18.55■□□□□ 0.56
CXCL1P09341 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CXCL1P09341 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CXCL1P09341 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.54■□□□□ 0.56
CXCL1P09341 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL1P09341 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.54■□□□□ 0.56
CXCL1P09341 AL391121.1-201ENST00000607967 1349 ntBASIC18.54■□□□□ 0.56
CXCL1P09341 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL1P09341 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL1P09341 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL1P09341 C9orf163-202ENST00000624034 2573 ntBASIC18.54■□□□□ 0.56
CXCL1P09341 LINC00565-201ENST00000562710 2331 ntBASIC18.54■□□□□ 0.56
CXCL1P09341 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL1P09341 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 AL117328.2-201ENST00000624617 1940 ntBASIC18.53■□□□□ 0.56
CXCL1P09341 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL1P09341 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL1P09341 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL1P09341 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL1P09341 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CXCL1P09341 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL1P09341 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CXCL1P09341 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL1P09341 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL1P09341 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL1P09341 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CXCL1P09341 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL1P09341 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.52■□□□□ 0.55
CXCL1P09341 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL1P09341 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL1P09341 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CXCL1P09341 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL1P09341 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL1P09341 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL1P09341 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL1P09341 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.51■□□□□ 0.55
CXCL1P09341 AC096887.2-201ENST00000623443 1957 ntBASIC18.51■□□□□ 0.55
CXCL1P09341 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC18.51■□□□□ 0.55
CXCL1P09341 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.51■□□□□ 0.55
CXCL1P09341 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL1P09341 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL1P09341 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CXCL1P09341 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL1P09341 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL1P09341 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL1P09341 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CXCL1P09341 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CXCL1P09341 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.5■□□□□ 0.55
CXCL1P09341 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL1P09341 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CXCL1P09341 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CXCL1P09341 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CXCL1P09341 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.5■□□□□ 0.55
CXCL1P09341 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.49■□□□□ 0.55
CXCL1P09341 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CXCL1P09341 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.49■□□□□ 0.55
CXCL1P09341 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL1P09341 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL1P09341 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.49■□□□□ 0.55
CXCL1P09341 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CXCL1P09341 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.49■□□□□ 0.55
CXCL1P09341 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CXCL1P09341 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.48■□□□□ 0.55
CXCL1P09341 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL1P09341 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.48■□□□□ 0.55
CXCL1P09341 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL1P09341 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL1P09341 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL1P09341 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL1P09341 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.47■□□□□ 0.55
CXCL1P09341 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL1P09341 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.47■□□□□ 0.55
CXCL1P09341 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL1P09341 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL1P09341 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL1P09341 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL1P09341 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL1P09341 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL1P09341 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 154.1 ms