Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 AC004790.2-201ENST00000623588 572 ntBASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 AC099398.1-201ENST00000567919 2776 ntBASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 AC108751.1-201ENST00000490852 363 ntBASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 IGHV3-22-201ENST00000520721 359 ntBASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 AC107918.2-201ENST00000530817 355 ntBASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC4Q9NTJ3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 TOP3BP1-201ENST00000420768 1380 ntBASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 AC026396.1-201ENST00000419388 421 ntBASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 RNA5SP415-201ENST00000517246 115 ntBASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 UNC93B6-202ENST00000528242 690 ntBASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 OR7E47P-204ENST00000575924 449 ntBASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC4Q9NTJ3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC21.73■■□□□ 1.07
SMC4Q9NTJ3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms