Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TTC28Q96AY4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.94■□□□□ 0.3
TTC28Q96AY4 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 FTLP10-202ENST00000505798 471 ntBASIC16.93■□□□□ 0.3
TTC28Q96AY4 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 AC020765.3-201ENST00000613051 740 ntBASIC16.93■□□□□ 0.3
TTC28Q96AY4 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.93■□□□□ 0.3
TTC28Q96AY4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 MIR1227-201ENST00000408484 88 ntBASIC16.93■□□□□ 0.3
TTC28Q96AY4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 AL591846.1-201ENST00000451736 433 ntBASIC16.93■□□□□ 0.3
TTC28Q96AY4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 AL096828.2-201ENST00000567259 1965 ntBASIC16.93■□□□□ 0.3
TTC28Q96AY4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TTC28Q96AY4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.93■□□□□ 0.3
TTC28Q96AY4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 EGFEM1P-202ENST00000431685 1563 ntBASIC16.92■□□□□ 0.3
TTC28Q96AY4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 AL162726.2-201ENST00000438986 1017 ntBASIC16.92■□□□□ 0.3
TTC28Q96AY4 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 RARRES2P5-201ENST00000564013 466 ntBASIC16.92■□□□□ 0.3
TTC28Q96AY4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 AP003419.4-201ENST00000616071 517 ntBASIC16.92■□□□□ 0.3
TTC28Q96AY4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.92■□□□□ 0.3
TTC28Q96AY4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TTC28Q96AY4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.91■□□□□ 0.3
TTC28Q96AY4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 RN7SL555P-201ENST00000584742 339 ntBASIC16.91■□□□□ 0.3
TTC28Q96AY4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.91■□□□□ 0.3
TTC28Q96AY4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TTC28Q96AY4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms