Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 ESRRAP1-201ENST00000400596 1257 ntBASIC13.71□□□□□ -0.21
HMGB3O15347 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.71□□□□□ -0.21
HMGB3O15347 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.71□□□□□ -0.21
HMGB3O15347 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 DGCR10-201ENST00000609839 495 ntBASIC13.71□□□□□ -0.21
HMGB3O15347 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
HMGB3O15347 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
HMGB3O15347 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.71□□□□□ -0.21
HMGB3O15347 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HMGB3O15347 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.71□□□□□ -0.22
HMGB3O15347 AC092850.2-201ENST00000623821 2697 ntBASIC13.71□□□□□ -0.22
HMGB3O15347 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.71□□□□□ -0.22
HMGB3O15347 LINC01311-201ENST00000565162 1445 ntBASIC13.71□□□□□ -0.22
HMGB3O15347 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HMGB3O15347 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
HMGB3O15347 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.71□□□□□ -0.22
HMGB3O15347 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.71□□□□□ -0.22
HMGB3O15347 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
HMGB3O15347 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
HMGB3O15347 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HMGB3O15347 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
HMGB3O15347 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
HMGB3O15347 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
HMGB3O15347 CYP2T1P-202ENST00000641596 2535 ntBASIC13.7□□□□□ -0.22
HMGB3O15347 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
HMGB3O15347 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC13.7□□□□□ -0.22
HMGB3O15347 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 AL513523.2-202ENST00000427283 2040 ntBASIC13.7□□□□□ -0.22
HMGB3O15347 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 CSPG4P11-201ENST00000560634 4910 ntBASIC13.7□□□□□ -0.22
HMGB3O15347 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC13.7□□□□□ -0.22
HMGB3O15347 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC13.7□□□□□ -0.22
HMGB3O15347 APTR-205ENST00000447009 902 ntTSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC13.7□□□□□ -0.22
HMGB3O15347 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.7□□□□□ -0.22
HMGB3O15347 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC13.7□□□□□ -0.22
HMGB3O15347 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.7□□□□□ -0.22
HMGB3O15347 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 AC073648.6-201ENST00000641589 218 ntBASIC13.7□□□□□ -0.22
HMGB3O15347 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
HMGB3O15347 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HMGB3O15347 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HMGB3O15347 FP325330.2-201ENST00000624219 5630 ntBASIC13.7□□□□□ -0.22
HMGB3O15347 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HMGB3O15347 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.7□□□□□ -0.22
HMGB3O15347 AC023824.1-201ENST00000562945 2975 ntBASIC13.7□□□□□ -0.22
HMGB3O15347 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms