Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 KRT18P3-201ENST00000451602 1288 ntBASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 FAM197Y3-203ENST00000618346 717 ntBASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 LINC02012-201ENST00000608206 1725 ntBASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 AC087163.2-201ENST00000457299 853 ntBASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 RNA5SP416-201ENST00000516838 111 ntBASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 AL671883.3-201ENST00000603274 991 ntBASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 AC064836.3-201ENST00000607928 673 ntBASIC16.02■□□□□ 0.16
PTCHD1Q96NR3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.02■□□□□ 0.15
PTCHD1Q96NR3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms